DNA methylation Percentage distribution report
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## Warning in get_regions_with_probes(regions_to_analyze, positions): The following regions selected have no probes to be analyzed thus were removed from the analysis:
## IGF2:alt-TSS-DMR## Warning in dir.create(dir_name): '../ExampleOfReport//ZH1609094r1__ZH1712576ms2_MethPctAnalysis'
## existe déjà ## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_wholeGenome")): '../ExampleOfReport//
## ZH1609094r1__ZH1712576ms2_MethPctAnalysis/MethPctPlot_wholeGenome' existe déjà ## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_perRegion")): '../ExampleOfReport//
## ZH1609094r1__ZH1712576ms2_MethPctAnalysis/MethPctPlot_perRegion' existe déjà General information
| Date of report | 2022-04-25 23:39:26 |
| Software version | 0.8 |
| Nb of tested samples | 2 |
| Names of tested samples | ZH1609094r1 ZH1712576ms2 |
| Control population filename | Control_population.csv.gz |
| Nb of tested cpg probes | 239 |
| Nb of tested regions | 9 |
| Mean size of tested regions | 2363.889 |
| Min|Max size of tested regions | 517-5047 |
| Mean probe count per tested region | 26.55556 |
| Min|Max probe count per tested region | 3-61 |
| Nb of tested control cpg probes | 76 |
| Nb of control regions | 3 |
| Mean size of control regions | 3328 |
| Min|Max size of control regions | 961-5047 |
| Mean probe count per control region | 25.33333 |
| Min|Max probe count per control region | 9-43 |
| Date of report | 2022-04-25 23:39:26 |
Methylation Percentage difference distribution per sample
ZH1609094r1
ZH1712576ms2
Methylation Percentage per region per sample
Methylation Percentage difference per region
| group | region_name | position_hg38 | ctrlPop | ZH1609094r1 | ZH1712576ms2 |
|---|---|---|---|---|---|
| MLID PHP | DIRAS3:TSS-DMR | chr1:68050105-68051590 | 50.901 | -12.417 | -13.823 |
| PHP | GNAS A/B:TSS-DMR | chr20:58888210-58890120 | 53.231 | -41.347 | -42.647 |
| BWS PHP | GNAS-AS1:TSS-DMR | chr20:58850924-58852977 | 46.255 | -14.425 | -36.767 |
| BWS PHP SRS | GNAS-NESP:TSS-DMR | chr20:58838984-58842960 | 51.702 | -12.190 | 29.123 |
| PHP | GNAS-XL:Ex1-DMR | chr20:58854222-58856248 | 55.667 | -9.951 | -38.934 |
| BWS SRS | H19/IGF2:IG-DMR | chr11:1997849-2002896 | 55.635 | -10.150 | -10.614 |
| BWS SRS | IGF2:Ex9-DMR | chr11:2132761-2133722 | 47.114 | 0.519 | 0.775 |
| KOS14 MLID PHP TS14 | MEG3:TSS-DMR | chr14:100824219-100827519 | 53.789 | -12.359 | -10.657 |
| BWS MLID | WRB:alt-TSS-DMR | chr21:39385765-39386282 | 47.258 | -10.058 | -11.858 |
Methylation Percentage profiles
DIRAS3:TSS-DMR
GNAS A/B:TSS-DMR
GNAS-AS1:TSS-DMR
GNAS-NESP:TSS-DMR
GNAS-XL:Ex1-DMR
H19/IGF2:IG-DMR
IGF2:Ex9-DMR
MEG3:TSS-DMR
WRB:alt-TSS-DMR
